PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG217100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 334aa    MW: 36176.9 Da    PI: 7.2537
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG217100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.21.9e-19287325239
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v 
  Pavir.5KG217100.1.p 287 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVY 325
                          7****************************9*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-20271325IPR003657WRKY domain
SuperFamilySSF1182904.05E-17279325IPR003657WRKY domain
PROSITE profilePS5081119.233281324IPR003657WRKY domain
SMARTSM007743.1E-12286330IPR003657WRKY domain
PfamPF031064.2E-16288326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
METKPEGHRH DHVHEEDATM AHGGALSLHH HRGATLFGHH QRHDDEEAAG RRGEIREVDF  60
FSRDSGARDG GGGRRLLAGG GGRDDVNIEL DLLTTATAAA AIAGEEGTAA KINHHKMEAS  120
AVEAELRRMV DENRRLRGIL EELTRNYSTL YQQLLQVTQH HPHQHHHPDL MNNRSSLLPH  180
THLNAMGAPT TSTTRQLLEA RASSTAQRQP DAGAEDEAAS DGAGEASPSL SNNAGNNDSD  240
GKRKMSQDGT AAPPRENGEQ AASSPGELPG RKARVSVRAR SEAPMISDGC QWRKYGQKMA  300
KGNPCPRAYY RCTMAVACPV RKQVYNTCMH GLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.257640.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG217100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814260.11e-158probable WRKY transcription factor 31
TrEMBLA0A2S3HW161e-157A0A2S3HW16_9POAL; Uncharacterized protein
STRINGPavir.Ea01024.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-33WRKY family protein