PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG222200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 223aa    MW: 23637.6 Da    PI: 11.0132
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG222200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-101768354
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                         +R+++t+eql  Lee+++       +++++++ +l    +++ +++++WFq ++ +
  Pavir.5KG222200.1.p 17 TRWCPTPEQLMMLEEMYRGGA----SHIQQITVHLacygRMEGKNIFYWFQKHKGR 68
                         8*****************965....56666666666666************99865 PP
2Wus_type_Homeobox74.91.2e-241670362
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRer 62
                         +tRW+PtpeQ+++Lee+y+ G      ++iq+it +L+ yG++e+kN+fyWFQ +k R  
  Pavir.5KG222200.1.p 16 STRWCPTPEQLMMLEEMYRGGA-----SHIQQITVHLACYGRMEGKNIFYWFQKHKGRTA 70
                         79******************95.....79****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-51671IPR009057Homeodomain-like
PfamPF000465.4E-81768IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASQQHQPQQ QMVAGSTRWC PTPEQLMMLE EMYRGGASHI QQITVHLACY GRMEGKNIFY  60
WFQKHKGRTA RSSAVGLAGG RGGEGAHHGH GHGFLAAPPA APYDCSDFDQ VAAGSRVNAP  120
RGRSHAAARR PHRAGGPTRP AGWRGSWPLA TQEERGLGKG ARGGEGLREV LGSLADADAR  180
ASATSREQRL RRLAGTSAGL FGRKGGVLPP QDFTKAVALG DL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG222200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J36471.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-25WOX family protein