PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG229500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 499aa    MW: 53066.4 Da    PI: 10.8576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG229500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31433491259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Pavir.5KG229500.1.p 433 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 491
                          69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-16386430IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.9E-34420492IPR003657WRKY domain
PROSITE profilePS5081129.757427493IPR003657WRKY domain
SuperFamilySSF1182901.24E-26430491IPR003657WRKY domain
SMARTSM007742.5E-38432492IPR003657WRKY domain
PfamPF031061.2E-26434490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MIYYSDATAA FASAPSLGLP YQYLFVYLFR RSLPSPHPAS PRPPLGLDCH RGPLLLLASS  60
SSSSPVPSSR VRGAPVSSSR RSSSTSPAGT GAARRRGRGF APRGMEGMEE ANRAAVESCH  120
RVLTLLSNPH GQLAPNKDLV AATGEAVAKF GSVTAKLSNS NGNGLLGHAR VRKIKKPLAI  180
FDSNLFLESS VAAAAAKAPS ASPITGLQLF PRYHQMEGSS SKDPIRIPTQ FPKRLLLENP  240
ASSLEGPTSQ APAVHMVQPV SVAPPAGTPT PALPAPHLHF IQQQHSYQRF QLMQQMKIQS  300
EMMKRSNLGD QGGSLSGGGG SGVGAKGVNL KFDSSNCTAS SSRSFLSSLS MEGSLASLDG  360
SRASRPFQLV SGSQASSTPE LGLVQRRRCT GKEDGSGRCA TGSRCHCSKK RKLRIRRSIK  420
VPAISNKVAD IPADEFSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDDPSML  480
IVTYEGDHNH NRVVAQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-194294911475Probable WRKY transcription factor 4
2lex_A4e-194294911475Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.104280.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG229500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796671.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A2T7C1J10.0A0A2T7C1J1_9POAL; Uncharacterized protein
STRINGPavir.J08083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-51WRKY DNA-binding protein 21