PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG229600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 1292aa    MW: 146874 Da    PI: 5.7924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG229600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.31.7e-0723299128
                  NAM  99 lvglkktLvfykgrapkge.ktdWvmheyrl 128
                          ++g+kkt+  y+g+apkg+ + dW+mheyr+
  Pavir.5KG229600.1.p   2 VIGMKKTFCHYTGKAPKGTrNQDWIMHEYRV 32 
                          58***************983579******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.85155IPR003441NAC domain
SuperFamilySSF1019416.67E-13255IPR003441NAC domain
SuperFamilySSF525405.8E-36214502IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.8E-7262392IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.0E-32264520IPR002182NB-ARC
PRINTSPR003644.6E-9269284No hitNo description
PRINTSPR003644.6E-9341355No hitNo description
PRINTSPR003644.6E-9442456No hitNo description
SuperFamilySSF520582.04E-33564773IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.9E-18605761IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036920642664IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036912665688IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520582.04E-33815997IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.3E-239091138IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367360935960IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF520585.27E-289841271IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003675110331065IPR006553Leucine-rich repeat, cysteine-containing subtype
PRINTSPR003644.6E-910791095No hitNo description
SMARTSM0036914010811105IPR003591Leucine-rich repeat, typical subtype
SMARTSM003673610811106IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:3.80.10.103.1E-811391269IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036714012341266IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1292 aa     Download sequence    Send to blast
MVIGMKKTFC HYTGKAPKGT RNQDWIMHEY RVEGRQWEDL FKVRGEYVLC RIFIKKQATV  60
STFSQPEQQG HYIDDFLSSG QLDAYGTREL DNWTSMELGN LATENDAVRP ASDQQERPSP  120
IEDGWVPYLS TQMDHIDNYL LQSCGVLLEE TCASIVMKKD DDAPDQSKSS GSSTLLASAK  180
GHFNLTDDLQ EEATDQWNFT NNSPLDFLKY RHPCLYASSE NIFGREEVYE KVIQILLQPV  240
DSSEPSNEYR YSSLSPVCSK RARKQDMGVL SIIGEAGFGK THLTKFIYND PRVDNYFHLK  300
MWIHMSDFDV TLLIEEIVKC VTGCNQSFLN QNALQEILKE NIMSRRFLVV LDGMWPEAED  360
ILDWSEWQKF CTQLKFGMEG SKLLVTTRSQ KVGELVATMG AILLNGLPDD SYWSFFDSRA  420
LALECANEDN VLEKVKGIAV KLKGSLLAAE VLGGLLRSYA VQYNTMVDRI LQSLQEENVT  480
LAALQFGYHC IPSHLKVCLL LCSLFPKSYH FDKDLLVDIF TVVANCVSPV GNPDKEDLGA  540
DYFVDLMASC FLQKAPLLLD HFVIHDLLHD MLRSASSEEN VRITNGKSEI LKTVHHLSVW  600
ADDLELRNLM ELGNQKQLIS LLVLKKLKVK LDTIIHFWCN HLTKLHWLNL SGCVITVLPE  660
NIGNLKFLRF LDVSYTRIVS LPDGLCYLHN LMILRVLDCP LEAFPPRFNN LINLRKLYAR  720
SAMFSKIFKI GNLTSLRDLP LFVVSAMPGY RIEELEGLKH LHGSLHVRSL ENIKDTGEAT  780
RAKLSDKQYI DKLVLEWSSR RVASSCRRDF GLDEEVLEAL QPHPNLKLLQ LTHYFGSTIP  840
TWLTTDKLLF LRGVWLENCC NLLDIPSLPS SITELKLINV GLHSLPLLWE ESEELTDIDR  900
IKTTSSIKST LLSRVHIECC PNLSNIDDWL LPHHLPALRS IQVSGCYDLS SVPVERFSGF  960
THLEKLEIFD CPNLVACCQM SLPSSIKQLS IGRCGDLDRS FPNCLSNVTS LTSLSMKNCP  1020
RITSLPWKRF QGYNSLEKLE IVDCPNITDS EKFVLPTSVR CLILNSCGDF VKSLPGCLEN  1080
LTSLTTLEIR NCPHITELPF QILQHLTALR YFTLENCDEL RLLELPCFLY LKSFSILNCA  1140
KLNDPEMIVS EDDEEQTNFP ALESLLVDKT SVIQLPCLWK RSRSILKLEI NGSSEEQIFT  1200
GDRKEWFRSL SSLQELCIHN CINLQSLPEV LSSTPSLRML RIYGCPKLTY LSEDSLPRSL  1260
RSLAFSNCNP VLMAQLADVK SRMKYRDYSD N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-26261852176767Disease resistance RPP13-like protein 4
6j5t_F1e-26261852176767Disease resistance RPP13-like protein 4
6j5t_G1e-26261852176767Disease resistance RPP13-like protein 4
6j5t_L1e-26261852176767Disease resistance RPP13-like protein 4
6j5t_O1e-26261852176767Disease resistance RPP13-like protein 4
6j5u_A1e-26261852176767Disease resistance RPP13-like protein 4
6j5v_A1e-26261852176767Disease resistance RPP13-like protein 4
6j5w_A1e-26261852176767Disease resistance RPP13-like protein 4
6j6i_C1e-26261852176767Disease resistance RPP13-like protein 4
6j6i_F1e-26261852176767Disease resistance RPP13-like protein 4
6j6i_G1e-26261852176767Disease resistance RPP13-like protein 4
6j6i_L1e-26261852176767Disease resistance RPP13-like protein 4
6j6i_O1e-26261852176767Disease resistance RPP13-like protein 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG229600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QZD90.0A0A3L6QZD9_PANMI; Disease resistance protein RGA2-like
STRINGPavir.Ea01308.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-11NAC domain containing protein 41