PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG229700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 58aa    MW: 6216.15 Da    PI: 10.0225
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG229700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.52.2e-092652127
                  NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                         lp+G+rFhPtd el++++Lk+k+ g+k
  Pavir.5KG229700.1.p 26 LPRGYRFHPTDAELINHHLKPKLLGHK 52
                         799*******************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-92252IPR003441NAC domain
PROSITE profilePS5100512.8092657IPR003441NAC domain
PfamPF023652.6E-62749IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MSGSPPLPSS PPQEAGTPGN LVPPDLPRGY RFHPTDAELI NHHLKPKLLG HKRMEKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG229700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815549.12e-22NAC domain-containing protein 59-like
TrEMBLA0A2T8IM624e-21A0A2T8IM62_9POAL; Uncharacterized protein
TrEMBLA0A3L6QZD94e-20A0A3L6QZD9_PANMI; Disease resistance protein RGA2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.18e-09NAC domain containing protein 6