PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG230300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 207aa    MW: 22287.3 Da    PI: 10.8992
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG230300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-1999133135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Pavir.5KG230300.1.p  99 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 133
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.94193129IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-1393151IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-1395134No hitNo description
Gene3DG3DSA:3.30.50.102.3E-1598134IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS00344099124IPR000679Zinc finger, GATA-type
PfamPF003203.3E-1799133IPR000679Zinc finger, GATA-type
CDDcd002029.79E-1399134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRRPLFPSNP SEIIHFSTPP LPFSATTLYY TLPKNRAAQR GRDRTRNQIS PSDPPPVADP  60
ATDRVRACPL LPPAPAPMGS ADRSEIDGVA VAGRGARGCV ECRATTTPMW RSGPTGPRSL  120
CNACGIRYRK KRRQELGLDH KQHQQLRQQH NGEAKTEVKD SSSSSGGGGS SNLQAVQKRR  180
LLMGVEEAAL LLMTLSSSPT STLLHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.27940.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG230300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814363.19e-69GATA transcription factor 23-like
TrEMBLA0A2T7DM742e-85A0A2T7DM74_9POAL; Uncharacterized protein
STRINGPavir.Ea01306.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-17GATA transcription factor 23