PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG230300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 174aa MW: 18918.4 Da PI: 10.7459

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG230300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	24.8	3e-08	84	100	19	35
GATA 19 nktLCnaCGlyyrkkgl 35 + +LCnaCG++yrkk++ Pavir.5KG230300.2.p 84 SESLCNACGIRYRKKRR 100 456***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	6.7E-5	85	101	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MRRPLFPSNP SEIIHFSTPP LPFSATTLYY TLPKNRAAQR GRDRTRNQIS PSDPPPVADP 60 ATDRVRACPL LPPAPAPMGS ADRSESLCNA CGIRYRKKRR QELGLDHKQH QQLRQQHNGE 120 AKTEVKDSSS SSGGGGSSNL QAVQKRRLLM GVEEAALLLM TLSSSPTSTL LHG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.2794	1e-140	callus\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG230300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814363.1	2e-39	GATA transcription factor 23-like
TrEMBL	A0A2T7DM74	2e-54	A0A2T7DM74_9POAL; Uncharacterized protein
STRING	Pavir.Ea01306.1.p	1e-98	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.5KG230300.2.p