PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG234000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 129aa    MW: 15309.4 Da    PI: 8.8155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG234000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.11.5e-2326118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+Y+ + GFsvr+s+ +    ++e+t r+fvCs+eg+ree++ + ++k+rr+r  tr+gC+ k+++ +++ + +w+v+++  e nH+
  Pavir.5KG234000.1.p  26 QFYNAYGLKKGFSVRRSYVEWDAGHNEMTLRKFVCSREGFREEKHMNrENKQRRPRGITRVGCRVKFVIARQRnTWQWYVKDFIDEYNHP 115
                          6*********************99*******************99986788999****************999899************** PP

                 FAR1  89 lap 91 
                          lap
  Pavir.5KG234000.1.p 116 LAP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2126118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MADLESLLEY SPIVSLLFAS EDEGFQFYNA YGLKKGFSVR RSYVEWDAGH NEMTLRKFVC  60
SREGFREEKH MNRENKQRRP RGITRVGCRV KFVIARQRNT WQWYVKDFID EYNHPLAPED  120
LSCLTTRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG234000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301886.16e-59protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A453HKV64e-55A0A453HKV6_AEGTS; Uncharacterized protein
STRINGPavir.Ea01242.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-19FAR1-related sequence 5