PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG255700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 129aa MW: 14016.4 Da PI: 11.8518

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG255700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.6e-05	59	108	11	55
HHHHHHHHHHHHHHCTSCC.C.........TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPk.as......kapskKlsKaeiLekAveYIksLq 55 +R++ i+ ++e Lr+l+P a+ + ++++l+ e L +A YI Lq Pavir.5KG255700.1.p 59 KRVAAIRRKMEALRRLVPAaAPcggeerRVDDGRLE--ELLLHAAGYILRLQ 108 79*****************55598888877888888..88999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-5	51	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-4	59	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MAAHASCDVA AGAATPTGAA SRRVGLRRPS RTTLKKKARK LMRKAGGGKR PRPSLSRTKR 60 VAAIRRKMEA LRRLVPAAAP CGGEERRVDD GRLEELLLHA AGYILRLQMQ VRVMQVMVHA 120 LNDDDPED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG255700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819435.1	3e-47	uncharacterized protein LOC112895669
TrEMBL	A0A3L6SPJ6	7e-51	A0A3L6SPJ6_PANMI; Uncharacterized protein
STRING	Pavir.J31342.1.p	4e-85	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Pavir.5KG255700.1.p