PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG269100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 599aa MW: 69360 Da PI: 7.0198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG269100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37	1.1e-11	26	81	1	55
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtr 55 +fYn+Y+ + GFsvr+s+ + ++e+t r+fvCs+eg++ee++ + ++k+rr+r Pavir.5KG269100.1.p 26 QFYNAYGLKKGFSVRRSYVEWDAGHNEMTLRKFVCSREGFHEEKHMNmENKQRRPR 81 6*******************99******************999434444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-10	26	84	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-35	164	258	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.061	447	479	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MSDLESLLEY SQIVSRLFAS EDEGFQFYNA YGLKKGFSVR RSYVEWDAGH NEMTLRKFVC 60 SREGFHEEKH MNMENKQRRP REMQYGGYDK VGYTQRDLYN FCHRHKQGTI AAGDAQTVIR 120 HLRERECRDA DFFFRSFTDD QGHLVGLFWC DTHCLLDYAA FGDVIVFDST YKTNRYNLPL 180 VPFVGVNHHK RTIVFGCGII SHENTNSFEW LLRTFFDANI QKHPISVITD GDLAMQRAIR 240 IVWSNTSHRL CGWHIEQNLV RNIHDDKVKE AFRVFMYDLC SIEEIERKWR AFLAENDVSK 300 ESWLYQMYEV RRIWCAAYHA DKCYLGLRSN QRSESMNARL QMQLDGKMTL LEMVEHYETC 360 LSRVRRNEAD DDIKALQSEP FTTPDASILE IDAKKRFTPN VFVLVQFRIK AASKCHLIEI 420 LDGDDTEEYI VGRKDKGDIM TYVKCDCTVE GNLKGVSCSC LAIRWTPCSH IFFVLGHRGE 480 RKLPDCSVLE RWTMGAKNDF PPLRKSTMYE YSTTLLRYRD LRNISRAASF SASRSTEGYE 540 RLKGALLQEA GMILPNVGAN EGKMYGPVLP QAPEADCEDI RDVLVPCMCL AEGLPRKS*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MSDLESLLEY SQIVSRLFAS EDEGFQFYNA YGLKKGFSVR RSYVEWDAGH NEMTLRKFVC  60
SREGFHEEKH MNMENKQRRP REMQYGGYDK VGYTQRDLYN FCHRHKQGTI AAGDAQTVIR  120
HLRERECRDA DFFFRSFTDD QGHLVGLFWC DTHCLLDYAA FGDVIVFDST YKTNRYNLPL  180
VPFVGVNHHK RTIVFGCGII SHENTNSFEW LLRTFFDANI QKHPISVITD GDLAMQRAIR  240
IVWSNTSHRL CGWHIEQNLV RNIHDDKVKE AFRVFMYDLC SIEEIERKWR AFLAENDVSK  300
ESWLYQMYEV RRIWCAAYHA DKCYLGLRSN QRSESMNARL QMQLDGKMTL LEMVEHYETC  360
LSRVRRNEAD DDIKALQSEP FTTPDASILE IDAKKRFTPN VFVLVQFRIK AASKCHLIEI  420
LDGDDTEEYI VGRKDKGDIM TYVKCDCTVE GNLKGVSCSC LAIRWTPCSH IFFVLGHRGE  480
RKLPDCSVLE RWTMGAKNDF PPLRKSTMYE YSTTLLRYRD LRNISRAASF SASRSTEGYE  540
RLKGALLQEA GMILPNVGAN EGKMYGPVLP QAPEADCEDI RDVLVPCMCL AEGLPRKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG269100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309297.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A452ZGZ6	0.0	A0A452ZGZ6_AEGTS; Uncharacterized protein
STRING	Pavir.J05000.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-57	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG269100.1.p