PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG273100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 248aa    MW: 26868.2 Da    PI: 4.923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG273100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-164689146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
  Pavir.5KG273100.2.p 46 RGRITADEERLIVQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 89
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-102653IPR009057Homeodomain-like
SuperFamilySSF466891.0E-192695IPR009057Homeodomain-like
PROSITE profilePS500904.312740IPR017877Myb-like domain
PROSITE profilePS5129422.7234195IPR017930Myb domain
SMARTSM007171.1E-134593IPR001005SANT/Myb domain
PfamPF002496.6E-144689IPR001005SANT/Myb domain
CDDcd001673.03E-115089No hitNo description
Gene3DG3DSA:1.10.10.608.4E-185491IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRRRGAGGGD EEGPLDGGGG RAAGLRRTGK SCRLRWVNYL HPDLRRGRIT ADEERLIVQL  60
HAQWGSRWSR IARSLPGRTD NEIKNFWRTR TRKKALEERQ HSSGSNKTAA SPLSSMTTAS  120
CCPGSPNSGA DTQSSSAAPS GDDSAIREGS GGDDAELEEA STATAAASQH EEPQEYCCTV  180
DQLWTEIAAA DAAASYVLDG WGSGHCYYSA AAEPPPMPSS PVWEYSSDYS LWRIDDEEYY  240
REMLDAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-17279537105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-16279591159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-16279591159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-16279560128MYB TRANSFORMING PROTEIN
1mse_C8e-17279537105C-Myb DNA-Binding Domain
1msf_C8e-17279537105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.447920.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG273100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283607e-93KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806457.11e-119LOW QUALITY PROTEIN: transcription factor MYB59-like
TrEMBLA0A2T7E7A01e-119A0A2T7E7A0_9POAL; Uncharacterized protein
STRINGPavir.J36591.1.p1e-162(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.27e-36myb domain protein 59