PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG285700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 200aa    MW: 22022.2 Da    PI: 12.3903
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG285700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-112964138
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                         rgr++ eE+e +++++  lG++ W+ Ia++++ gRt+ 
  Pavir.5KG285700.1.p 29 RGRFSFEEEETIIQLHSILGNK-WSVIAARLP-GRTDH 64
                         89********************.*********.***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.77E-151264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-81236IPR009057Homeodomain-like
PROSITE profilePS5129416.3692477IPR017930Myb domain
SMARTSM007172.9E-52875IPR001005SANT/Myb domain
PfamPF002496.5E-102964IPR001005SANT/Myb domain
CDDcd001675.57E-73165No hitNo description
Gene3DG3DSA:1.10.10.601.0E-123765IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPGSHGRARA VRKSCRLRWT NYLRPDIKRG RFSFEEEETI IQLHSILGNK WSVIAARLPG  60
RTDHERSRTT GTHIRKRLLC MGIDPSPTGP ASTSSTSPRS SSPPRRRLLP YAGRPRHAPR  120
LRAAHQLTGP APPRRLHPAL GLGRDRRQQQ QQLLPWLLQA QMAAAYRSAA VLGGAAGWGQ  180
AFERARAGVG GSPWAAWDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG285700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485791e-122AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096796.12e-40transcription factor MYB102
TrEMBLA0A2X0SML31e-40A0A2X0SML3_WHEAT; Uncharacterized protein
STRINGPavir.J02993.1.p1e-138(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.15e-38myb domain protein 74