PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG289000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 169aa    MW: 17434.8 Da    PI: 11.0077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG289000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS551.6e-172310383153
                 GRAS  83 l..fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg 153
                          l  f+evsP++ + + +aN aI + ++        +++H+ D+++s+G+QWp+Ll+aL+  p  + pp + +T+ g+++++
  Pavir.5KG289000.1.p  23 LirFNEVSPWFAVPNALANAAIAQTAAAMgaatepRQIHVADIGVSHGVQWPTLLEALTRVPrgSTPPAVHLTVGGPAAAH 103
                          235*******************996654444677899**********************76644889******98776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.0721168IPR005202Transcription factor GRAS
PfamPF035145.6E-1523103IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MPPCECPTPM FSGVDPRLFR ASLIRFNEVS PWFAVPNALA NAAIAQTAAA MGAATEPRQI  60
HVADIGVSHG VQWPTLLEAL TRVPRGSTPP AVHLTVGGPA AAHRCRSPLH LPATTAHRSC  120
SGTPRPSTWT SPSCKHHART ACTALSPPAR PSSSASSSGS ATPPPTSR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG289000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654143.13e-50nodulation-signaling pathway 1 protein
SwissprotQ4VYC85e-22NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A3L6E2874e-52A0A3L6E287_MAIZE; Nodulation-signaling pathway 1 protein
STRINGPavir.J21140.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-14GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]