PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG312700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 257aa    MW: 26891.8 Da    PI: 6.2459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG312700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-1698145555
                  AP2   5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Pavir.5KG312700.1.p  98 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 145
                          9*****.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.36495153IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2096155IPR016177DNA-binding domain
PRINTSPR003673.5E-796107IPR001471AP2/ERF domain
SMARTSM003801.1E-2998159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2798154IPR001471AP2/ERF domain
PfamPF008479.2E-1298145IPR001471AP2/ERF domain
CDDcd000184.02E-1698154No hitNo description
PRINTSPR003673.5E-7119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEQYQYASYM YNSSSYPDHA SGCAGGAGVT GAAADAGADD MQRLLNALML DMAAESESFS  60
DDMEAASSDS SSSACLSAAN DSGEKKSSAL GRPATLIGVR KRPWGKFAAE IRDSTRKGAR  120
VWLGTFDSPE AAALAYDQAA FSVRGAAAVL NFPVERVQDS LRALALSASS ASAAAAAAAG  180
SPVLALKSRH SIRKRSPNKN KKPPPHQHQH QRPQQQAAAA APPPQPAYPG SVVELEDLGA  240
DYLDELLRVS SELDHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-24981551774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.252290.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG312700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341745e-69BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds.
GenBankJX4699505e-69JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802925.15e-93ethylene-responsive transcription factor 1B-like
TrEMBLA0A3L6QN381e-100A0A3L6QN38_PANMI; AP2-EREBP-type transcription factor
STRINGPavir.J37124.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-33ethylene response factor 1