PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG327400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 278aa MW: 29876.7 Da PI: 10.8144

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG327400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.2	2.2e-38	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++kv +++l++ vi+ v d+ +++PwdLp a+e e yfFs r+ ++ +g r++r + sgyWk+tgk Pavir.5KG327400.1.p 11 LPPGFRFHPTDEELVVQYLRRKVLARPLPA-AVIPVVhDVARLDPWDLPG---ASEGEGYFFSLRRAPATgRGGRRRR-AGSGYWKTTGK 95 79**************************.8899998*******3...3566889999988766525666666.599**** PP NAM 89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+ + ++ lvg+k+ L+f++g+ ++ ++t Wvmheyrl Pavir.5KG327400.1.p 96 ETPVFLQcggrRQLLVGVKTALAFHRGEPSS-SRTGWVMHEYRL 138 **987655566******877665.8*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-43	7	172	IPR003441	NAC domain
PROSITE profile	PS51005	44.191	11	172	IPR003441	NAC domain
Pfam	PF02365	1.8E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MESPAQAPRQ LPPGFRFHPT DEELVVQYLR RKVLARPLPA AVIPVVHDVA RLDPWDLPGA 60 SEGEGYFFSL RRAPATGRGG RRRRAGSGYW KTTGKETPVF LQCGGRRQLL VGVKTALAFH 120 RGEPSSSRTG WVMHEYRLAV PGGPAVAEQR KNANHGRVAE PGEWIVCRVS PKNRPRSRLN 180 RDGDSKAPGN RTSTAHGAAA LQQHREGDGR QLPSLLMSPQ PSSSSCVTGV TGKPPSLLMS 240 PQPSSSSCVT GVTGISDQDE VSSISIRDAP ADSQREA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	11	172	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	11	172	20	168	NAC domain-containing protein 19
3swm_B	1e-30	11	172	20	168	NAC domain-containing protein 19
3swm_C	1e-30	11	172	20	168	NAC domain-containing protein 19
3swm_D	1e-30	11	172	20	168	NAC domain-containing protein 19
3swp_A	1e-30	11	172	20	168	NAC domain-containing protein 19
3swp_B	1e-30	11	172	20	168	NAC domain-containing protein 19
3swp_C	1e-30	11	172	20	168	NAC domain-containing protein 19
3swp_D	1e-30	11	172	20	168	NAC domain-containing protein 19
4dul_A	1e-30	11	172	17	165	NAC domain-containing protein 19
4dul_B	1e-30	11	172	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG327400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017008	1e-134	KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800656.1	1e-133	NAC domain-containing protein 83-like
TrEMBL	A0A2T7EUG8	1e-133	A0A2T7EUG8_9POAL; Uncharacterized protein
STRING	Pavir.J23083.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	5e-43	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Pavir.5KG327400.1.p