PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG334500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 211aa MW: 23974.4 Da PI: 6.3615

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG334500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.2	5.2e-08	29	67	2	40
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 f+ +Y+ + GF vrk++++k+k +g++t+ ++vC +eg Pavir.5KG334500.1.p 29 FWIRYGGQKGFGVRKRYTNKRKSDGKVTSCRYVCANEGP 67 999*********************************995 PP
2	FAR1	25	6.4e-08	68	102	57	90
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHela 90 etrt+C+ ++ + +++ +gk++v +l+leHnH l+ Pavir.5KG334500.1.p 68 ETRTDCQVRMGLVLDQeKGKYKVVDLVLEHNHILQ 102 89*******999999*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-5	29	67	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEENRVGVLP SLLPEIGMEF NTIDEAWMFW IRYGGQKGFG VRKRYTNKRK SDGKVTSCRY 60 VCANEGPETR TDCQVRMGLV LDQEKGKYKV VDLVLEHNHI LQLPETSHLM VSQRKISELQ 120 GFEIETADDA GIGPKAAHEL ASIQVGGSLN LSYTFRDHRN YLRGKLQREM AYGQAGSMLM 180 YFQDKIAENP SFQYALQMDL EEQIINIFLG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG334500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	1e-177	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBank	CT835758	1e-177	CT835758.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123K24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	1e-133	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A0N7KS91	1e-130	A0A0N7KS91_ORYSJ; Os10g0571900 protein (Fragment)
STRING	OS10T0571900-00	1e-130	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-22	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG334500.1.p