PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG341300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 392aa    MW: 42858.5 Da    PI: 6.6352
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG341300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.21.1e-32861792102
                          HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                          F++k+ye++ d++++ ++sw     gnsfvv+d++ +a  +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++         weF+h+sF  g
  Pavir.5KG341300.2.p  86 FVSKTYEMVADAATDAVVSWApgGAGNSFVVWDPQALAVGILPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHESFLSG 166
                          9********************55556*****************************************999.........*********** PP

                          XXXXXXXXXXXXX CS
         HSF_DNA-bind  90 kkellekikrkks 102
                          +k+ll++ikr++ 
  Pavir.5KG341300.2.p 167 QKHLLRNIKRRRA 179
                          **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5182177IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3083177IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-3483177IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-1786109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-2986177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-17126138IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340127151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-17139151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAASSSSSSP LAPRPSGSGG SKPGTTRASG GTLGLRLGLG GEAMAARAPA AVKREPKPEP  60
WAAEPESGPA VVLPRPVEGP PMPAPFVSKT YEMVADAATD AVVSWAPGGA GNSFVVWDPQ  120
ALAVGILPRF FKHANFASFI RQLNIYGFRK VNPDRWEFAH ESFLSGQKHL LRNIKRRRAP  180
KPQMEAQPAN GASICFGQPK DSSEVERLKR DRAALRAEVL TLKQQYISCK SQLIALEDRI  240
LKNERNQQHV VAFFAKVLSN PAFVQQFLLK YAVNKELCST VKRQRLTENE EQHVDTPLKN  300
GKEPALATDG NASAASSDGG AVPKHEPMAE WNNQEMDNIW DDVWDDLDAI PGAEMDQEDK  360
AAARFEEFMG RPCGWVDDCP YLVEQMQFVE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-247917713120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.361441e-120callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG341300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814071.10.0heat stress transcription factor A-6a-like
SwissprotQ657C01e-147HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A2T7DKP30.0A0A2T7DKP3_9POAL; Uncharacterized protein
STRINGPavir.Ea01559.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-74heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]