PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG352600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 145aa    MW: 15984.1 Da    PI: 8.4524
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG352600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.27.7e-133896563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         ++ +rk++NR++A+rsR+RK+++++ L++ v++L a N a++  +   +  +a++++e+
  Pavir.5KG352600.1.p 38 RKRKRKESNRLSAQRSRARKQQQLDDLTKQVAALRARNGAMAAAAYDVQRRCAAVQAEN 96
                         6789********************************************99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-103498IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-736117No hitNo description
PROSITE profilePS502179.8873699IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.7E-83882No hitNo description
PfamPF001704.8E-93890IPR004827Basic-leucine zipper domain
CDDcd147021.86E-123990No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMASPPSMVS AVTASPSTGS EPEAPCCDPQ LAAVTAERKR KRKESNRLSA QRSRARKQQQ  60
LDDLTKQVAA LRARNGAMAA AAYDVQRRCA AVQAENALLQ AMNLELGERL QSLAELIQSM  120
EDAAMYQQYH QPQLLDANMY NYYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RKRKRK
23743RKRKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG352600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818325.11e-77bZIP transcription factor 44-like
TrEMBLA0A2S3HV763e-76A0A2S3HV76_9POAL; Uncharacterized protein
STRINGPavir.Ea01670.1.p3e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137572428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-10basic leucine-zipper 44