PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG354700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 374aa    MW: 39749.2 Da    PI: 6.1118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG354700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31167225259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++ tY+g+Hnh 
  Pavir.5KG354700.1.p 167 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRSDPSIFILTYTGDHNHA 225
                          79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30156227IPR003657WRKY domain
PROSITE profilePS5081132.96161227IPR003657WRKY domain
SuperFamilySSF1182901.31E-25165227IPR003657WRKY domain
SMARTSM007741.9E-36166226IPR003657WRKY domain
PfamPF031061.3E-25168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RSRLSPPRQG GTNPFAALLP PQPRKEKEQE QAEPAKEPEA  60
DTGWRFPDLC AGGGQGGDEL LRALLAAQPP LPQPLPTPPS PPTPPQRQLQ PVDVPPPPQV  120
HAAPAASAPA RAQPSGRPVP GGVPRSKRRK NQVKKVVCHV PADSSSSDVW AWRKYGQKPI  180
KGSPYPRGYY RCSSSKGCAA RKQVERSRSD PSIFILTYTG DHNHAAPTHR NSLAGTTRHK  240
FPTSSSAAPQ PPPPSVVVCG GGAASPGDEP HPPQQPSPGR NSTPTAGLSP TTPLRTPSME  300
EDDDDEDGLR VEDIEMAGED ELLFMNTDDD DAAPLESMPS LFDTVHEPFL SSSWVSASTT  360
AGEPPTGAAG AKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-20151228380Disease resistance protein RRS1
5w3x_D9e-20151228380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG354700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586180.0KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814242.10.0probable WRKY transcription factor 27
TrEMBLA0A2T7DL500.0A0A2T7DL50_9POAL; Uncharacterized protein
STRINGPavir.Ea01906.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-46WRKY family protein