PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG370500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 735aa    MW: 82602.2 Da    PI: 6.5209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG370500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.69.6e-445666941127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeel+v+yL+k++++k++++  +++e+diy+++PwdLp k v+++e  wyfFs++ +ky +++r+ ra+ sgyW+  g+d
  Pavir.5KG370500.1.p 566 LPPGFRFQPTDEELIVHYLCKRAAAKPCPI-PIVAELDIYQFDPWDLPaKGVNGGEGVWYFFSPSTHKYGNSSRPCRAAGSGYWNVVGTD 654
                          79****************************.88***************678888888********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+++s+  +ge+ g+ ktLvfy+gr p+g+kt+W+m+eyr
  Pavir.5KG370500.1.p 655 KDIFSStaDGEVLGMYKTLVFYRGRWPRGQKTTWFMKEYR 694
                          ****99889999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.7E-17124262IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078871.2E-40413562IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019412.48E-51565724IPR003441NAC domain
PROSITE profilePS5100551.105566724IPR003441NAC domain
PfamPF023653.0E-21567694IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MAELKPPSLV VTNCNAAINP QDQTESEVIH ILTELKEEMR KQSKKLTESK DDTSEIRKQL  60
EKLTESYNDQ SKKLEKLTES HSDLCKQLEL HTKGTSGDDS AASRSQSNQV QQPRYKLKFT  120
SEVTEKIEKG QSIDISVALV EYNNEDQTVE DEPLASAIVE LVVVNAEFNQ HDNQYNWSRE  180
DFERNIKKAR QPNSAAGGVD QSVKSIVSNG RFNLAHGVKS HSGSKIFSNS SNKKVRLGVM  240
VVSPTEERVL EGLSNPFFVR GHDRPNRQAI DEMLASYDFT DQNAMGNNFL GAPGNNGLLS  300
SALVGIGTGQ NFMGDDHVPF HAIGTEFNTN QTALPVHLIL DTPNVELRKR RWDLLEQLMP  360
LYSCQHKSIK SVLPTMRLMS EKTPRRGGVL IEPLEPDDSD ERRPLKRMMH NKYRLRFVNK  420
VCETYYTREQ IKAYDGNHLK VALFDENNTR ITYGPLSSAS VEVVALHGDF SVDGDQDYWT  480
WDEFSRGIVC PRPGKEGSVL GGDLILALDD GEACLADAFF QVTSFVARTG KFKMGVKMLA  540
SGRQDERIQE GISEAFWVKD RRVGDLPPGF RFQPTDEELI VHYLCKRAAA KPCPIPIVAE  600
LDIYQFDPWD LPAKGVNGGE GVWYFFSPST HKYGNSSRPC RAAGSGYWNV VGTDKDIFSS  660
TADGEVLGMY KTLVFYRGRW PRGQKTTWFM KEYRRLPADG TKVSPSTSSM MLDESRVLCK  720
IFQKTDQLPP VQFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4956572714171Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG370500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-179PREDICTED: uncharacterized protein LOC107304550
STRINGPavir.J04622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-50NAC-like, activated by AP3/PI