PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG370500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 708aa    MW: 79744.1 Da    PI: 6.8307
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG370500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.69e-445396671127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeel+v+yL+k++++k++++  +++e+diy+++PwdLp k v+++e  wyfFs++ +ky +++r+ ra+ sgyW+  g+d
  Pavir.5KG370500.2.p 539 LPPGFRFQPTDEELIVHYLCKRAAAKPCPI-PIVAELDIYQFDPWDLPaKGVNGGEGVWYFFSPSTHKYGNSSRPCRAAGSGYWNVVGTD 627
                          79****************************.88***************678888888********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+++s+  +ge+ g+ ktLvfy+gr p+g+kt+W+m+eyr
  Pavir.5KG370500.2.p 628 KDIFSStaDGEVLGMYKTLVFYRGRWPRGQKTTWFMKEYR 667
                          ****99889999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.6E-17124262IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078871.2E-40386535IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019412.35E-51538697IPR003441NAC domain
PROSITE profilePS5100551.105539697IPR003441NAC domain
PfamPF023652.9E-21540667IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAELKPPSLV VTNCNAAINP QDQTESEVIH ILTELKEEMR KQSKKLTESK DDTSEIRKQL  60
EKLTESYNDQ SKKLEKLTES HSDLCKQLEL HTKGTSGDDS AASRSQSNQV QQPRYKLKFT  120
SEVTEKIEKG QSIDISVALV EYNNEDQTVE DEPLASAIVE LVVVNAEFNQ HDNQYNWSRE  180
DFERNIKKAR QPNSAAGGVD QSVKSIVSNG RFNLAHGVKS HSGSKIFSNS SNKKVRLGVM  240
VVSPTEERVL EGLSNPFFVR GHDRPNRQDG LLSSALVGIG TGQNFMGDDH VPFHAIGTEF  300
NTNQTALPVH LILDTPNVEL RKRRWDLLEQ LMPLYSCQHK SIKSVLPTMR LMSEKTPRRG  360
GVLIEPLEPD DSDERRPLKR MMHNKYRLRF VNKVCETYYT REQIKAYDGN HLKVALFDEN  420
NTRITYGPLS SASVEVVALH GDFSVDGDQD YWTWDEFSRG IVCPRPGKEG SVLGGDLILA  480
LDDGEACLAD AFFQVTSFVA RTGKFKMGVK MLASGRQDER IQEGISEAFW VKDRRVGDLP  540
PGFRFQPTDE ELIVHYLCKR AAAKPCPIPI VAELDIYQFD PWDLPAKGVN GGEGVWYFFS  600
PSTHKYGNSS RPCRAAGSGY WNVVGTDKDI FSSTADGEVL GMYKTLVFYR GRWPRGQKTT  660
WFMKEYRRLP ADGTKVSPST SSMMLDESRV LCKIFQKTDQ LPPVQFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4953870014171Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG370500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-175PREDICTED: uncharacterized protein LOC107304550
STRINGPavir.J04622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-50NAC-like, activated by AP3/PI