PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG370500.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 685aa    MW: 76906.5 Da    PI: 7.0578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG370500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.78.6e-445286561127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeel+v+yL+k++++k++++  +++e+diy+++PwdLp k v+++e  wyfFs++ +ky +++r+ ra+ sgyW+  g+d
  Pavir.5KG370500.4.p 528 LPPGFRFQPTDEELIVHYLCKRAAAKPCPI-PIVAELDIYQFDPWDLPaKGVNGGEGVWYFFSPSTHKYGNSSRPCRAAGSGYWNVVGTD 616
                          79****************************.88***************678888888********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+++s+  +ge+ g+ ktLvfy+gr p+g+kt+W+m+eyr
  Pavir.5KG370500.4.p 617 KDIFSStaDGEVLGMYKTLVFYRGRWPRGQKTTWFMKEYR 656
                          ****99889999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.5E-1786224IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078871.1E-40375524IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019411.11E-48527663IPR003441NAC domain
PROSITE profilePS5100547.702528680IPR003441NAC domain
PfamPF023652.7E-21529656IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MRKQSKKLTE SKDDTSEIRK QLEKLTESYN DQSKKLEKLT ESHSDLCKQL ELHTKGTSGD  60
DSAASRSQSN QVQQPRYKLK FTSEVTEKIE KGQSIDISVA LVEYNNEDQT VEDEPLASAI  120
VELVVVNAEF NQHDNQYNWS REDFERNIKK ARQPNSAAGG VDQSVKSIVS NGRFNLAHGV  180
KSHSGSKIFS NSSNKKVRLG VMVVSPTEER VLEGLSNPFF VRGHDRPNRQ AIDEMLASYD  240
FTDQNAMGNN FLGAPGNNGL LSSALVGIGT GQNFMGDDHV PFHAIGTEFN TNQTALPVHL  300
ILDTPNVELR KRRWDLLEQL MPLYSCQHKS IKSVLPTMRL MSEKTPRRGG VLIEPLEPDD  360
SDERRPLKRM MHNKYRLRFV NKVCETYYTR EQIKAYDGNH LKVALFDENN TRITYGPLSS  420
ASVEVVALHG DFSVDGDQDY WTWDEFSRGI VCPRPGKEGS VLGGDLILAL DDGEACLADA  480
FFQVTSFVAR TGKFKMGVKM LASGRQDERI QEGISEAFWV KDRRVGDLPP GFRFQPTDEE  540
LIVHYLCKRA AAKPCPIPIV AELDIYQFDP WDLPAKGVNG GEGVWYFFSP STHKYGNSSR  600
PCRAAGSGYW NVVGTDKDIF SSTADGEVLG MYKTLVFYRG RWPRGQKTTW FMKEYRRLPA  660
DGTKVSPSTS SMMTTSIWSS KFGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4652765614139Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG370500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-180PREDICTED: uncharacterized protein LOC107304550
STRINGPavir.J04622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-47NAC domain containing protein 47