PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG379800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 201aa MW: 22601.5 Da PI: 8.0585

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG379800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.5e-10	73	111	52	90
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +++++tgC+a++++ +++d+ w+v+k+ +eHnH+l+ Pavir.5KG379800.1.p 73 DHLNTTQHTGCRAMVRLLRSDDHGWYVAKFIEEHNHPLS 111 45678999*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-7	74	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSFLDVILGA LMAAPMILGT DARVEEGAVR KNEAKCGKHF RNHSFFPHHL DFDVHFAYRW 60 GQRGGMREGS GPDHLNTTQH TGCRAMVRLL RSDDHGWYVA KFIEEHNHPL SMCSDERHQW 120 NPHNRIDPVT KEFIRSPRSN NIPLSRLYGV LGSALGGSSE SIFTRSSLRG VCSRLSQESI 180 VDDIGKTMDS LRTMQTQDPN *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.14199	1e-175	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG379800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T1MS23	3e-35	T1MS23_TRIUA; Uncharacterized protein
STRING	Pavir.J17187.1.p	6e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG379800.1.p