PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG401600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 327aa    MW: 33519.3 Da    PI: 10.1355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG401600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-29144203159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a+d +v+++tY g Hnh+
  Pavir.5KG401600.1.p 144 VNDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKVQRCARDMSVLVTTYDGAHNHP 203
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29132203IPR003657WRKY domain
SuperFamilySSF1182901.44E-25138204IPR003657WRKY domain
PROSITE profilePS5081126.211139205IPR003657WRKY domain
SMARTSM007743.4E-34144204IPR003657WRKY domain
PfamPF031063.9E-25145203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MELKTLVFKE LMVRGADKMN LADEPAGQFL TLSLRPTRAI AASCHATGGD IVDAKLRAHA  60
GDDEAAATAG LALGLRCDSG EPPVVRAVVS AGTKRQRAAS DDDRHGTTAG GSKRKALVLP  120
APPRQERPAA GRVSFRARCS AATVNDGCQW RKYGQKVAKG NPCPRAYYRC TGAPDCPVRK  180
KVQRCARDMS VLVTTYDGAH NHPLTPYAAA MASAMLASAA ASSSPSSSAA AAADATGTAT  240
AARAARGTPM LVRPVAVLPP RRYPSSGGAP AAAASSQNVA PVASIMQKAV ADPKFRAAVM  300
AAVASYVGEQ CGGRTIDDLL TLAPPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-211442061475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG401600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818819.11e-166probable WRKY transcription factor 47 isoform X2
TrEMBLA0A2T8ILB71e-165A0A2T8ILB7_9POAL; Uncharacterized protein
STRINGPavir.Ea01595.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.19e-41WRKY DNA-binding protein 9