PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG409600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 251aa    MW: 26804.2 Da    PI: 7.758
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG409600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.8e-144684341
                  TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                         + +CnCkk+ Clk+YC+Cf+ + +Cs+ C+C++C N+e+
  Pavir.5KG409600.1.p 46 RPSCNCKKTTCLKRYCQCFQGHFFCSHACNCKGCWNSEH 84
                         568*********************************986 PP
2TCR45.81.2e-14118155239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          + kgC+C+ks C k+YCeCf++++ C+ +CkC++C+N+
  Pavir.5KG409600.1.p 118 HGKGCTCNKSGCRKNYCECFKKQVACTMRCKCQGCENS 155
                          579**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.2E-94385IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163425.2845157IPR005172CRC domain
PfamPF036382.2E-104882IPR005172CRC domain
SMARTSM011147.0E-9117158IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-10120155IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MHAGLVVVLV LQLTGVPSHR RPAAGTCLRL LCSDHRLAMD EDKEQRPSCN CKKTTCLKRY  60
CQCFQGHFFC SHACNCKGCW NSEHRRTFVE EHAELRLKTK LGASRSKDNA LTAEQRVHGK  120
GCTCNKSGCR KNYCECFKKQ VACTMRCKCQ GCENSYGTGG KGLQGNGDPG GPSGQPNGAP  180
DGGDGSPGGS GESAVVIDEE LQRPTEAGVA ENVAAIDPLD PGHGNNWCHL LPPELSTPKE  240
SWACAGNPDT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-114615411120Protein lin-54 homolog
5fd3_B1e-114615411120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG409600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814306.11e-125protein lin-54-like
TrEMBLA0A2T7DJV41e-124A0A2T7DJV4_9POAL; Uncharacterized protein
STRINGPavir.Ea02165.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-22Tesmin/TSO1-like CXC domain-containing protein