PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG418900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 242aa    MW: 27270.2 Da    PI: 9.9667
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG418900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.97.2e-1850125371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +++Lr  ++    + +k+e+ g++t+neva+e+ +e          d kn+rRR+YD++  L al++i+k +k+ei+w g
  Pavir.5KG418900.1.p  50 RWGLRECSKI---VSKKVETkGRTTCNEVADEICAElkltfngqefDDKNIRRRVYDVFSMLIALRVIAK-DKKEIKWTG 125
                          5799999999...99999999*************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-2946129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-1548125IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-1351126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.6E-1552125IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144587.01E-25130229IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-28132236No hitNo description
SMARTSM011382.6E-24132235IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-21133230IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAAPCGDADG AGLPPLPRRG GGGNAADREE EGDKSNKARK ETAGAQRIAR WGLRECSKIV  60
SKKVETKGRT TCNEVADEIC AELKLTFNGQ EFDDKNIRRR VYDVFSMLIA LRVIAKDKKE  120
IKWTGLSNFR YEKMKKLEEA HKELTARIKN KKKLLQEIEK QFDDLQNIKF RNQVLQRPAE  180
SANGICLPFL LVKASKKARV EIEISEDSNF AGFDFNCAPF TLHDDVSILD GIRRNSIRRA  240
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-18521261189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG418900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819130.11e-141transcription factor-like protein DPB
TrEMBLA0A3L6R0L21e-145A0A3L6R0L2_PANMI; Transcription factor-like protein DPB
STRINGPavir.Ea02346.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.19e-51Transcription factor DP