PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG420800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 118aa    MW: 13026.5 Da    PI: 10.3015
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG420800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.5e-1562116251
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNr 51 
                          ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr
  Pavir.5KG420800.1.p  62 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMRLqeygQVGDANVFYWFQNR 116
                          89*****************99*********************************9 PP
2Wus_type_Homeobox1001.8e-3261116257
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNr 57 
                          +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNr
  Pavir.5KG420800.1.p  61 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQEYGQVGDANVFYWFQNR 116
                          589****************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-551116IPR009057Homeodomain-like
SuperFamilySSF466895.56E-1056116IPR009057Homeodomain-like
PROSITE profilePS500718.58458117IPR001356Homeobox domain
CDDcd000863.16E-561116No hitNo description
PfamPF000466.7E-1362116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MASSFNDNRH WPSMFRSNKH AAEPSPFLSG GGGGNATSAA ASGLKHPSSG FAGGEERTPD  60
PKPRWNPRPE QIRILEAIFN SGMVNPPRDE IPRIRMRLQE YGQVGDANVF YWFQNRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG420800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557945e-95BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819605.11e-64WUSCHEL-related homeobox 7-like
SwissprotQ0JKK61e-42WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A2S3HTC83e-63A0A2S3HTC8_9POAL; Uncharacterized protein
STRINGPavir.Eb02702.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-41homeobox-3