PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG422600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 234aa    MW: 23314.1 Da    PI: 7.4409
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG422600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-20115149135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCg+t+TplWR+gp+g+k+LCnaCG++++k+++
  Pavir.5KG422600.1.p 115 CANCGATSTPLWRNGPRGPKSLCNACGIRFKKEER 149
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-20109166IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.285109145IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14111149No hitNo description
Gene3DG3DSA:3.30.50.103.5E-17113149IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.94E-13114146No hitNo description
PfamPF003203.3E-18115149IPR000679Zinc finger, GATA-type
PROSITE patternPS003440115140IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGTCGGG CSLLFAASDG YYERCGGGGG EVGFGAAGSY GSSVDCTLSL  60
GTSSTRRAEA GAPRAPAAAL PCWPEAAQPV PGCNNGGSQH GGVAEASNAA GARRCANCGA  120
TSTPLWRNGP RGPKSLCNAC GIRFKKEERR AAAAAAAPAA MASDGAVEYA PSYGYARQPQ  180
QWGCYGPASS FGMFGDAGGE VGGPCLPWGL GVMPSSSPAF GAVREMPSLF PYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG422600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734641e-44AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012871e-44AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845461e-44DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815390.13e-96GATA transcription factor 15-like
TrEMBLA0A3L6SU771e-103A0A3L6SU77_PANMI; GATA transcription factor 20-like
STRINGPavir.Ea02338.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-15GATA transcription factor 20