PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG426500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 305aa    MW: 32033.2 Da    PI: 4.4326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG426500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-2087137155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  Pavir.5KG426500.1.p  87 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 137
                          69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1287137IPR001471AP2/ERF domain
CDDcd000181.42E-2887147No hitNo description
Gene3DG3DSA:3.30.730.102.4E-2988145IPR001471AP2/ERF domain
PROSITE profilePS5103223.34188145IPR001471AP2/ERF domain
SMARTSM003804.1E-3588151IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2188145IPR016177DNA-binding domain
PRINTSPR003672.4E-1089100IPR001471AP2/ERF domain
PRINTSPR003672.4E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEEEGCGSRR VGRMVRELPP MALAAAPAAP APEQCAAGDG  60
DRGKRLGGGG SGARRRLAKG GPGATSTKFR GVRRRPWGKF AAEIRDPWRG VRVWLGTFDT  120
AEEAARVYDT AAIQLRGPNA TTNFAAAQSG SGAGQDQDAD PDPATPGYES GAESSPAASS  180
PTSVLRKVPS LSSLAEDSFK DDSDAAPCEP AAGERCGLAV LGEEALGEFV PFEDAPVYAT  240
SGFWDIRPDA GFLYAEPSWN ASAYYPASSG EAPGWAAASP TAQENDYFED LRDLFPLHPL  300
PAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2181144771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152840.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG426500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969361.11e-165ethylene-responsive transcription factor 4-like
TrEMBLA0A368RA881e-163A0A368RA88_SETIT; Uncharacterized protein
STRINGPavir.Ea02288.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-26cytokinin response factor 1