PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG432400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 345aa    MW: 36687.5 Da    PI: 6.1982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG432400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.21e-25161465128
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 
                          f+ hPtd elv+ yL++ +e+ +  +  +i++ d+y ++P dL +      ++ +e+ wyfF++ ++k+ +gkrk r  at +g W++  
  Pavir.5KG432400.1.p  16 FHSHPTDLELVNSYLRPFLETGEAAA--FIHKGDVYAADPADLTRqfapaVAQDGERAWYFFTPLRHKSVRGKRKARtvATGEGCWHNEA 103
                          6679*****************99666..8**************84467755566888********************76688******** PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+k+v+++  +++++g ++++ f k++    ++t W+m e rl
  Pavir.5KG432400.1.p 104 KSKPVCTAihEKRQIGYRQSFSFIKKDGGARVRTGWLMMELRL 146
                          ******99889999***********999999********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.54212175IPR003441NAC domain
SuperFamilySSF1019411.02E-3014175IPR003441NAC domain
PfamPF023652.7E-1515146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVRTPSAASK PPCAAFHSHP TDLELVNSYL RPFLETGEAA AFIHKGDVYA ADPADLTRQF  60
APAVAQDGER AWYFFTPLRH KSVRGKRKAR TVATGEGCWH NEAKSKPVCT AIHEKRQIGY  120
RQSFSFIKKD GGARVRTGWL MMELRLLKDD AGQQGPRAEE ESALGNLVLC KVYRSPRNPE  180
PSGGKEEEAA DGDGESSAAT ADDDDDDDSS DAPGPTKTSD ERESSDATVA APPGREEKAA  240
GDEDSAEASA ASPARKRKAP DDEGSGAGAA PPRRASPGAR AHPATEMQCP HCGTHLVVTL  300
KLPETKSETE IAKGEPGPGA SDAAPRGEAR GAPPEKKVRF HQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-121617319166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG432400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.10.0protein ATAF2-like
TrEMBLA0A3L6SNQ30.0A0A3L6SNQ3_PANMI; Protein ATAF2-like
STRINGPavir.J25882.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-17NAC domain containing protein 47