PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG434500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 323aa    MW: 34993.4 Da    PI: 10.301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG434500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.38.5e-1318103185
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ +       s ++++ 
  Pavir.5KG434500.1.p  18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERTRGGP------SPWAFYG 101
                          7*******************************************999999********************9988765......3466666 PP

             trihelix  84 ql 85 
                          ql
  Pavir.5KG434500.1.p 102 QL 103
                          66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2316104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERT RGGPSPWAFY GQLDLLVGPT LAGGGGNGAK  120
KPSPPRAAMP VFRRRKSPSR SPSPQSPPPL PMALPLPNYR RGSDLPSANL IHKAAAAAAA  180
AAAESDSEDG YNNNDYDDDD GSQQSPSRSV SSRSGGGAAA APAVGSKRKM SSGSGGFGEL  240
ARAIETFAEM YERMEAAKQR HAEEMERQRI KFLKDLELKR MQTFVDMQLQ LARAKHARKG  300
DASSEMLMSL AALPFLSSPA YL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.88220.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG434500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278550.0KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-172trihelix transcription factor ASIL2
SwissprotQ9LJG87e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-177A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
STRINGPavir.Ea02366.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors