PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG434900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 174aa MW: 17377.6 Da PI: 10.429

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG434900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	91.9	5.1e-29	83	138	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v + grr+ Pavir.5KG434900.1.p 83 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 138 5789*****************************************98765255544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-26	84	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.527	85	139	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-18	87	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MANLPDADAA GFKLFGKVIQ PPDAHRAAEA GADSPQPLTT TAAAPPPVLP PPQPQSPPLP 60 PPALQLQAAG AGGAGAGAGG AGEPLPCPRC GSRETKFCYF NNYNVRQPRH LCRACRRYWT 120 AGGALRRVAS ASPGRRRPRP AARSAAAAAI AAAIATASSA SATAAAEEGG GER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG434900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954609	7e-95	EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969505.1	2e-53	dof zinc finger protein 5-like
TrEMBL	A0A368R917	4e-52	A0A368R917_SETIT; Uncharacterized protein
STRING	GRMZM2G327189_P01	2e-46	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-21	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG434900.1.p