PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG437100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 419aa    MW: 44953.8 Da    PI: 8.7876
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG437100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95.2e-0876132155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++ +g+++A+++d   ++  k+k+ + g f+ +e A   ++ a++k++g
  Pavir.5KG437100.2.p  76 SIYRGVTRHRATGKFEAHLWDRHARCpaKSKKGRQGAFDNEEAAGHTYDLAALKYWG 132
                          57*******************54488987788888*****99999*********998 PP
2AP253.17.7e-17178230156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s y+GV  ++++g+W+A+I         + k+ +lg fgt eeAa+a++ a+++l+g+
  Pavir.5KG437100.2.p 178 SEYRGVAKHHRNGKWEARIGYaN-----CkKYLYLGIFGTQEEAARAYDLAALELRGH 230
                          569***************76633.....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-576132IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-976144IPR016177DNA-binding domain
PROSITE profilePS5103216.47677143IPR001471AP2/ERF domain
SMARTSM003801.1E-977149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-1077144IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-16178239IPR016177DNA-binding domain
CDDcd000183.29E-19178239No hitNo description
PfamPF008471.8E-12179230IPR001471AP2/ERF domain
PROSITE profilePS5103217.372179237IPR001471AP2/ERF domain
SMARTSM003801.0E-25179243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17179237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTTRPHCAAT PLSPSSRASS PSSLSCVSSA ASSSGSCYVP ASWLTKCGGK KKRSSRRRAK  60
NGAAGGAVAV PRRNSSIYRG VTRHRATGKF EAHLWDRHAR CPAKSKKGRQ GAFDNEEAAG  120
HTYDLAALKY WGSESSNCKL NFPLELYRHE HERMQCMSRE AYLAALRRKS SSFSRGASEY  180
RGVAKHHRNG KWEARIGYAN CKKYLYLGIF GTQEEAARAY DLAALELRGH AAITNFDISS  240
YTDYLQQLEQ PIPKAQPKPA LKPKPEPVDE EALLPLPMAA GPIPAPLLTP KPEPEDELAG  300
PLAPLPPGPV LRDADDVDHA IAVILQALCM DPADFEARYP ARGARAPGWP SDDHQLRGLP  360
LPDAVGFEGD IETLFEALGS AGPGQGGEVQ VQPPAAVPDA AVSCAAAAIS SLASGRWW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG437100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493535e-67EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814616.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3HQU40.0A0A2S3HQU4_9POAL; Uncharacterized protein
TrEMBLA0A3L6QW980.0A0A3L6QW98_PANMI; Uncharacterized protein
STRINGPavir.Ea03213.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-64AP2 family protein