PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG437100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 320aa    MW: 34551.1 Da    PI: 4.8784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG437100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-1779131156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s y+GV  ++++g+W+A+I         + k+ +lg fgt eeAa+a++ a+++l+g+
  Pavir.5KG437100.3.p  79 SEYRGVAKHHRNGKWEARIGYaN-----CkKYLYLGIFGTQEEAARAYDLAALELRGH 131
                          569***************76633.....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.349144IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-5845IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-6945IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1679140IPR016177DNA-binding domain
CDDcd000183.55E-2179140No hitNo description
PROSITE profilePS5103217.37280138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-1880138IPR001471AP2/ERF domain
SMARTSM003801.0E-2580144IPR001471AP2/ERF domain
PfamPF008471.2E-1280131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMVCLPPTVY LGAFDNEEAA GHTYDLAALK YWGSESSNCK LNFPLELYRH EHERMQCMSR  60
EAYLAALRRK SSSFSRGASE YRGVAKHHRN GKWEARIGYA NCKKYLYLGI FGTQEEAARA  120
YDLAALELRG HAAITNFDIS SYTDYLQQLE QPIPKAQPKP ALKPKPEPVD EEALLPLPMA  180
AGPIPAPLLT PKPEPEDELA GPLAPLPPGP VLRDADDVDH AIAVILQALC MDPADFEARY  240
PARGARAPGW PSDDHQLRGL PLPDAVGFEG DIETLFEALG SAGPGQGGEV QVQPPAAVPD  300
AAVSCAAAAI SSLASGRWW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. Also expressed in roots, seedlings, and siliques, and, at low levels, in leaves. {ECO:0000269|PubMed:12172019, ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG437100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493534e-67EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814616.11e-165AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6PQQ47e-48BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2T8IJR21e-171A0A2T8IJR2_9POAL; Uncharacterized protein
STRINGPavir.Ea03213.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-50AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]