PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG438600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 122aa    MW: 13362.6 Da    PI: 5.2323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG438600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.92.3e-0738981572
                  NAM 15 vveyLkkkvegkklelee..vikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgk 72
                         +v+yL++k+++++l++ +  vi   d y  +P++L +k+ ++++  wy Fs+rd+   +g+
  Pavir.5KG438600.1.p 38 IVHYLRRKLRDEPLPTGTglVIGCRDAYAEHPKKLVTKLGEGSNgAWYLFSPRDTGDGEGE 98
                         67***********777443247777**********97666655569*******99877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.67624122IPR003441NAC domain
SuperFamilySSF1019415.89E-1038106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MCESTSQAAP GDEAEYNEES TWPSPASASP RRTTTSSIVH YLRRKLRDEP LPTGTGLVIG  60
CRDAYAEHPK KLVTKLGEGS NGAWYLFSPR DTGDGEGEGH WKAVEAEVLG GAEHERNSFR  120
WA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG438600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682895.12e-29NAC domain-containing protein 101
TrEMBLK3XSE94e-28K3XSE9_SETIT; Uncharacterized protein
STRINGPavir.Ea03223.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2933733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-07NAC domain containing protein 47