PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG452000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 262aa    MW: 27850.5 Da    PI: 6.7185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG452000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-161360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd+ lv ++ q+G g+W+  ar  g++R +k+c++rw++yl
  Pavir.5KG452000.1.p 13 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding46.58.4e-1567109246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g  T+ Ed  + ++++ lG++ W++Ia++++ gRt++++k++w++
  Pavir.5KG452000.1.p  67 GGITPAEDAAIRELHAALGNK-WSKIAAHLP-GRTDNEIKNYWRT 109
                          5669*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-19863IPR009057Homeodomain-like
PROSITE profilePS5129423.136864IPR017930Myb domain
SuperFamilySSF466895.62E-3011107IPR009057Homeodomain-like
SMARTSM007175.9E-121262IPR001005SANT/Myb domain
PfamPF002491.4E-131360IPR001005SANT/Myb domain
CDDcd001671.37E-91560No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2464113IPR009057Homeodomain-like
PROSITE profilePS5129418.33565115IPR017930Myb domain
SMARTSM007171.6E-1365113IPR001005SANT/Myb domain
PfamPF002492.2E-1367109IPR001005SANT/Myb domain
CDDcd001672.08E-1170109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRTCGGEPA VRKGPWTLEE DLVLVGYISQ HGEGSWDNLA RAAGLNRNGK SCRLRWLNYL  60
RPGVRRGGIT PAEDAAIREL HAALGNKWSK IAAHLPGRTD NEIKNYWRTR IQRRPAAPAS  120
SAQQPYRAPA TATATAAAMT ASEGASSSSS AAASHGSSAD WWYVEPVNHP EQGAHCSQSV  180
AAAAAGVDSG SASSALTSRD SSTTAGVDGQ HMQTSYGDRY YYSELSSAAA ADGVEMVDAG  240
SFWNVDDDFW GRFQMLHYPD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2671141107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG452000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-118KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815399.11e-116myb-related protein 340-like
TrEMBLA0A3L6QZT61e-119A0A3L6QZT6_PANMI; Uncharacterized protein
STRINGPavir.J35999.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-53myb domain protein 21