PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG455800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25211.7 Da    PI: 9.8161
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG455800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1977130356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  Pavir.5KG455800.1.p  77 KKLRLSKEQCRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 130
                          67789***********************************************98 PP
2HD-ZIP_I/II119.41.9e-3877164289
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          kk+rlskeq +lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E ++e+Lkr++ +l+een+rL++eveeLr+
  Pavir.5KG455800.1.p  77 KKLRLSKEQCRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTELECEYLKRCFGSLTEENRRLQREVEELRA 164
                          9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1850133IPR009057Homeodomain-like
SuperFamilySSF466898.13E-1969133IPR009057Homeodomain-like
PROSITE profilePS5007116.71472132IPR001356Homeobox domain
SMARTSM003891.9E-1574136IPR001356Homeobox domain
CDDcd000865.82E-1475133No hitNo description
PfamPF000464.6E-1677130IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PfamPF021831.1E-9132165IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-22132175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGSTSPSGLE LTMAVPGLSS SSGSEGGFGC NAGHGSRNAA MRDLDMNQPA SGGEEEEFPM  60
GSVEEDEEER GAGHRPKKLR LSKEQCRLLE ESFRLNHTLT PKQKEALAVK LKLRPRQVEV  120
WFQNRRARTK LKQTELECEY LKRCFGSLTE ENRRLQREVE ELRAMRVAPP TVLSPHTRQP  180
LPASALTMCP RCERITAATT TGAGAPAART PRPAAAAANP FHRGVPIRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG455800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626880.0BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds.
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7282480.0KJ728248.1 Zea mays clone pUT6525 HB transcription factor (HB46) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819203.11e-123homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX11e-119HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-119HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2T7DJ801e-130A0A2T7DJ80_9POAL; Uncharacterized protein
STRINGPavir.Ea02204.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-60homeobox-leucine zipper protein 17