PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG464100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 351aa    MW: 37028.8 Da    PI: 6.2506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG464100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.12.7e-26190248259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Pavir.5KG464100.1.p 190 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYVAEHCHP 248
                          699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26188250IPR003657WRKY domain
SMARTSM007742.9E-31189249IPR003657WRKY domain
SuperFamilySSF1182905.1E-24189250IPR003657WRKY domain
PROSITE profilePS5081129.103190250IPR003657WRKY domain
PfamPF031062.7E-22191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRAALLLLVM AEHFNDWDLQ AVVRSCGGVA HPDPPAGCPR GAAAAPREKA EEEAPAPAEP  60
ATLPAAEPAR AAPVAPPAQG HERATPPAAK GAALLYDLEY LDLDRKPFLL PATPPPLAGD  120
DPREREVMIS FPAAAAAAAA AASTSGAQQR ALPPGRKAGA RTPRPKRSKK SQLKKVVREM  180
PVADGGASSS DPWAWRKYGQ KPIKGSPYPR GYYKCSSMKG CMARKLVERS PAKPGVLIVT  240
YVAEHCHPVP TQLNALAGTT RHKSSSSPKS HDHEQGPPSV GEDAARRDAD SNDKLALELG  300
AEEMAAGDDD NELWPAGMDL DELLAPVDDD FDFEHAIDDG DGVLGRRLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-18170251280Disease resistance protein RRS1
5w3x_D6e-18170251280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG464100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-115AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-115AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969219.11e-153probable WRKY transcription factor 65
RefseqXP_025815405.11e-152probable WRKY transcription factor 27
TrEMBLA0A3L6R1B61e-155A0A3L6R1B6_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Ea02436.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-35WRKY family protein