PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG467600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 319aa    MW: 33743.2 Da    PI: 4.5366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG467600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Pavir.5KG467600.1.p 14 RGPWSQEEDAILRSFVQRFGNAgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                         89******************99*************************97 PP
2Myb_DNA-binding38.13.5e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T +Ed+l++ +    G++ W+ Ia++++ gRt++++k++w++
  Pavir.5KG467600.1.p  69 GGFTDQEDDLILSLYGDIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.001962IPR017930Myb domain
SuperFamilySSF466899.39E-2612109IPR009057Homeodomain-like
SMARTSM007171.6E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-221569IPR009057Homeodomain-like
CDDcd001673.16E-81662No hitNo description
PROSITE profilePS5129418.63463117IPR017930Myb domain
SMARTSM007172.9E-1167115IPR001005SANT/Myb domain
PfamPF002494.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2170116IPR009057Homeodomain-like
CDDcd001673.16E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCDTT KVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDQEDDLIL SLYGDIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLVA  120
STREGSRPPS SPLPPPPPAS DNDGATAADS QPQDDDQRPA PTPPALANLD DDASDTGAAA  180
VDDDALLLLL KSEQLYAELV GLIEQQSPWL TTTTTGPLPP SSSSAATPSS SSGTSPTSTG  240
SSSGSCAAVW PTGMDVHDTT LLSESSSSSS SLFDACYGFV SDDAGFGAAL LPASSYSFQD  300
LLAASYDEFT SRVVLGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-25141164104C-Myb DNA-Binding Domain
1msf_C8e-25141164104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG467600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-125AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.11e-125transcription factor MYB30 isoform X2
TrEMBLA0A3L6SJ651e-140A0A3L6SJ65_PANMI; Myb-related protein Zm38-like
STRINGPavir.Ea02676.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-63myb domain protein 87