PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG474900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 248aa    MW: 26375.6 Da    PI: 7.1346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG474900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30162220159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  Pavir.5KG474900.1.p 162 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 220
                          59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-32149221IPR003657WRKY domain
SuperFamilySSF1182902.35E-27155221IPR003657WRKY domain
PROSITE profilePS5081130.664157222IPR003657WRKY domain
SMARTSM007741.5E-34162221IPR003657WRKY domain
PfamPF031062.9E-24163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MALASCDSLP ADAVCFFPAM ACRHPCDGAG AGSGLAASAF YGGARSPAAA LLFSRPQLAF  60
GGAALTGLAP PRQPDAVFEC LSEEDVSSVV PGTTFGPPPP EMPVEYAGPD AASGYAHHVM  120
SVSRMSSRYV MHRGAAAMAG AEGSTRTTDR IAFRVRSEEE VLDDGYKWRK YGKKSVKNSP  180
NPRNYYRCST EGCNVKKRVE RDKDDPSYVV TMYEGVHNHV SPGTIYYATQ DVASGRFFVA  240
GMHQALD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-23152222777Probable WRKY transcription factor 4
2lex_A5e-23152222777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG474900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586121e-103KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817958.11e-123probable WRKY transcription factor 57
TrEMBLA0A2S3HST61e-122A0A2S3HST6_9POAL; Uncharacterized protein
TrEMBLA0A3L6R2X61e-121A0A3L6R2X6_PANMI; Uncharacterized protein
STRINGPavir.Ea02619.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-38WRKY DNA-binding protein 51