PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG474900.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 235aa MW: 24797.8 Da PI: 6.2344

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG474900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.4e-31	149	207	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Pavir.5KG474900.2.p 149 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 207 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-32	136	208	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	142	208	IPR003657	WRKY domain
PROSITE profile	PS50811	30.664	144	209	IPR003657	WRKY domain
SMART	SM00774	1.5E-34	149	208	IPR003657	WRKY domain
Pfam	PF03106	2.6E-24	150	206	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MALASCDSLP ADAVCFFPAM ACRHPCDGAG AGSGLAASAF YGGARSPAAA LLFSRPQLAF 60 GGAALTGLAP PRQPDAVFEC LSEEDVSSVV PGTTFGPPPP EMPVEYAGPD AASGYAHHVM 120 GAAAMAGAEG STRTTDRIAF RVRSEEEVLD DGYKWRKYGK KSVKNSPNPR NYYRCSTEGC 180 NVKKRVERDK DDPSYVVTMY EGVHNHVSPG TIYYATQDVA SGRFFVAGMH QALD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-23	139	209	7	77	Probable WRKY transcription factor 4
2lex_A	4e-23	139	209	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG474900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058612	1e-102	KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817958.1	1e-125	probable WRKY transcription factor 57
Swissprot	Q93WU9	2e-37	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2S3HST6	1e-124	A0A2S3HST6_9POAL; Uncharacterized protein
STRING	Pavir.Ea02619.1.p	1e-143	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-38	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Pavir.5KG474900.2.p

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]