PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG484500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 419aa    MW: 44064.9 Da    PI: 9.7587
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG484500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-12110158155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Pavir.5KG484500.1.p 110 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAEKADAARAYDVAAQRFRG 158
                          78****9888.8*********......44*************************98 PP
2B392.72.7e-29242334185
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed   g++W+++++y+++s++yvltkGW++Fvk++ L++gD+v F
  Pavir.5KG484500.1.p 242 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDaAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLQAGDVVGF 331
                          89******************************95556799*******9999*************************************** PP

                          EE- CS
                   B3  83 kld 85 
                          +++
  Pavir.5KG484500.1.p 332 YRS 334
                          954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16110166IPR016177DNA-binding domain
PfamPF008471.0E-7110158IPR001471AP2/ERF domain
CDDcd000182.58E-21110166No hitNo description
Gene3DG3DSA:3.30.730.101.3E-19111166IPR001471AP2/ERF domain
SMARTSM003801.8E-25111172IPR001471AP2/ERF domain
PROSITE profilePS5103219.48111166IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-37235336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29240334IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-27240346No hitNo description
SMARTSM010198.8E-22242351IPR003340B3 DNA binding domain
PfamPF023628.9E-26242334IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14242351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLYIPRLPPR TPPQLSLLGY SYAHCNTSQS ATEAVQEMDS ASSLVVDDTS SGGACTDKLK  60
ALAAAAAEGA TLERMGSGAS AVVDAAEPGA EADSGHVGAG VGVGGKLPSS RYKGVVPQPN  120
GRWGAQIYER HQRVWLGTFA EKADAARAYD VAAQRFRGRD AVTNFRPLSD ADPDAAAELR  180
FLASRSKAEV VDMLRKHTYF DELAQNKRAF AAAAAPTTSS PAGARSPSSA PRSPAAAREH  240
LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QLPSAGGESK GVLLNFEDAA AGKVWRFRYS  300
YWNSSQSYVL TKGWSRFVKE KCLQAGDVVG FYRSAAAAGA DSKLFIACRL RLGGVTASTA  360
PAAEPSSAPV AKAVRLFGVD LLTAPAPAEA LPGCKRARDL AAPPQAAFKK QLVELALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4923936311129DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1941e-122root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG484500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819477.10.0AP2/ERF and B3 domain-containing protein Os01g0693400-like
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A3L6STZ80.0A0A3L6STZ8_PANMI; DNA-binding protein RAV1
STRINGPavir.Ea02092.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-99related to ABI3/VP1 1