PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG512700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 839aa MW: 95029 Da PI: 7.3509

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG512700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.7	3.5e-27	85	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e+++ +k+r+++a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+ Pavir.5KG512700.1.p 85 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRSVaaGKKTRKRQASIREGCNAMLEVLRRGDSKWVVTKLVKEHNHEV 174 9*************************************998877767899999*******************************95 PP
2	FAR1	60.5	5.3e-19	208	298	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ r + +r gC+a +++ ++ +++w v+kl leH+Hel Pavir.5KG512700.1.p 208 FYYSYASRTGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVRASDPSRDGCDALFEIIRKGKDVWTVSKLILEHTHEL 296 9*****************9.6777*********99999986566777788889****************************9 PP FAR1 90 ap 91 +p Pavir.5KG512700.1.p 297 NP 298 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-25	85	174	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.9E-16	208	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-19	400	490	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	678	714	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-5	680	710	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-5	689	716	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MMEPQVVDLE DDSINFWASL GVNPHVDQMP LHNVQIVNHQ AQPLPSAAAA QPQSVCRDLF 60 PVEADACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR 120 EGFSKEKRSV AAGKKTRKRQ ASIREGCNAM LEVLRRGDSK WVVTKLVKEH NHEVGLPSRV 180 HYIAIESDAV VDPYIGMEFE SLESAKTFYY SYASRTGFEA RVRQSRKSQD ESLKMLKLVC 240 SRHRYHSGRE NNGEDTKRVR ASDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP 300 ASRVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQHPREMR YNDLGPEDTQ SLFEYLKKRQ 360 DEDPSFFYAV QNGKSGLAAN IFWADAKARM AYYHFGDAVK FETAYRKNKE TIPIIIFLGV 420 NHHVQPVVFG CALLIDESEA SFTWLFEKWL EAMHMGPPIS LVTEFNRVMG TAIAKVLPDT 480 HHIFCEKHIL DTVKEGLHGM FPDIEPLITD MRKCIDCSRI EELFESGWNS VIIKHGLSNN 540 ELLQSLYDIR QQWAPAYTKK VFYPGNQMPT TSENIEKVVE KHFSSKTELR VAISQLGEVI 600 SSSFDAEVQA DYFTMFQMPP LSTASPVEKQ GSSIFTSTIF GLFQGQFAES FGYNAERLED 660 ETVHKYSVTR YEGDEEIHTV SFNPDQSTVN CSCCLFESCG ILCRHALRIF IIEGVRVLPK 720 AYILKRWTKH AKNIITSENY TDLRGDHEDP STVRYNDLCC DAVKCAKEGS KSSEIYAIAK 780 DALHKALDEV IRSSKNFREQ QTLRSCTTSI KRPIKKFDKA KDSSGKSLKR YFSVLANG*

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MMEPQVVDLE DDSINFWASL GVNPHVDQMP LHNVQIVNHQ AQPLPSAAAA QPQSVCRDLF  60
PVEADACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR  120
EGFSKEKRSV AAGKKTRKRQ ASIREGCNAM LEVLRRGDSK WVVTKLVKEH NHEVGLPSRV  180
HYIAIESDAV VDPYIGMEFE SLESAKTFYY SYASRTGFEA RVRQSRKSQD ESLKMLKLVC  240
SRHRYHSGRE NNGEDTKRVR ASDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP  300
ASRVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQHPREMR YNDLGPEDTQ SLFEYLKKRQ  360
DEDPSFFYAV QNGKSGLAAN IFWADAKARM AYYHFGDAVK FETAYRKNKE TIPIIIFLGV  420
NHHVQPVVFG CALLIDESEA SFTWLFEKWL EAMHMGPPIS LVTEFNRVMG TAIAKVLPDT  480
HHIFCEKHIL DTVKEGLHGM FPDIEPLITD MRKCIDCSRI EELFESGWNS VIIKHGLSNN  540
ELLQSLYDIR QQWAPAYTKK VFYPGNQMPT TSENIEKVVE KHFSSKTELR VAISQLGEVI  600
SSSFDAEVQA DYFTMFQMPP LSTASPVEKQ GSSIFTSTIF GLFQGQFAES FGYNAERLED  660
ETVHKYSVTR YEGDEEIHTV SFNPDQSTVN CSCCLFESCG ILCRHALRIF IIEGVRVLPK  720
AYILKRWTKH AKNIITSENY TDLRGDHEDP STVRYNDLCC DAVKCAKEGS KSSEIYAIAK  780
DALHKALDEV IRSSKNFREQ QTLRSCTTSI KRPIKKFDKA KDSSGKSLKR YFSVLANG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.33098	0.0	callus\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG512700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820561.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2T7D3X2	0.0	A0A2T7D3X2_9POAL; Uncharacterized protein
STRING	Pavir.Fa01859.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-120	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG512700.1.p