PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG516200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 208aa    MW: 22778.8 Da    PI: 5.7373
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG516200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18171051196
                          HHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  11 lksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          +++ r+ +p  f++++        g   ++s  + l++ +g++W v+l  +  +gr++lt+GW++Fv+ n L+eg+f+v ++dg+++f  
  Pavir.5KG516200.1.p  17 FAR-RIEIPGGFLSHIpeerrrtsGATVASSANVALKNAEGKTWPVEL--EEIDGRMFLTTGWSKFVEGNCLREGEFLVVEYDGNMDF-- 101
                          444.5899999997779888888866667999****************..***********************************999.. PP

                          EEEE CS
                   B3  93 vvkv 96 
                           v+v
  Pavir.5KG516200.1.p 102 GVSV 105
                          4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-214109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-215113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.1696109IPR003340B3 DNA binding domain
CDDcd100172.61E-207107No hitNo description
SMARTSM010191.7E-149109IPR003340B3 DNA binding domain
PfamPF023624.5E-1517103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEGQRSPRFF KVLVGDFARR IEIPGGFLSH IPEERRRTSG ATVASSANVA LKNAEGKTWP  60
VELEEIDGRM FLTTGWSKFV EGNCLREGEF LVVEYDGNMD FGVSVFCVNA VEKAVWPSGS  120
GAQASGSLRE QPCDVFPSSK KGRCDDESTK TVKSPIHSHT QELMEDDKAK AIAEAMRTLH  180
VDKLAVELFC ATLCLYKWRV EAAAGAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG516200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816069.11e-113B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA12e-60Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2T7DHD31e-112A0A2T7DHD3_9POAL; Uncharacterized protein
STRINGPavir.Eb02932.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-14B3 family protein