PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG522400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 299aa    MW: 30697.9 Da    PI: 4.9249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG522400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.1e-3083141259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver++ +p++v++tY+ eHnh+
  Pavir.5KG522400.1.p  83 TDSWAWRKYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERNRAEPDMVIVTYSFEHNHS 141
                          69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.90777143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-3080141IPR003657WRKY domain
SuperFamilySSF1182905.36E-2580141IPR003657WRKY domain
SMARTSM007743.8E-3582142IPR003657WRKY domain
PfamPF031066.9E-2684140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGEWSDGAA AVSDGEGKVG PVHGVPADDC PGSPVSSPPA PSTAAPAASG RRRSANKRVV  60
TVPLADMSGP RPKGAGGEGN TPTDSWAWRK YGQKPIKGSP FPRAYYRCSS NKGCPARKQV  120
ERNRAEPDMV IVTYSFEHNH SNAAPRAAQQ NRPAPKPKPK PAPPEPAESL SPGSHEVAGA  180
VATAEGGGAA VEVHDDFRWL YDGVSVTSSA SPSDVDAADE MLYGTMFFGA APPAPFPDEF  240
GDVAGLFDGG GGGEEDAMFA GLGELPECAM VFRRHAGDGL PMGGGVKVEQ PAESTAMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1654140376Disease resistance protein RRS1
5w3x_D2e-1654140376Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG522400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586181e-112KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.11e-145probable WRKY transcription factor 65
TrEMBLA0A3L6SUP71e-158A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Ea02968.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-36WRKY DNA-binding protein 65