PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG527400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 635aa MW: 74977.2 Da PI: 8.7305

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG527400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.6	2e-13	83	157	8	90
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 G+ +rk +++ + +++++ C+++gk++ +++ ++ rr++ +tgCk k+ vk+ +gkw+ tk+++eHnH+++ Pavir.5KG527400.1.p 83 LLNGYAIRKGTNYLK------KTYQLECNRSGKPKVMENA-QRIRRRNYILKTGCKMKVIVKLI-NGKWVFTKVDSEHNHNVV 157 556777777777666......56889********9999.99*****************.*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-11	79	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-33	248	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.617	512	548	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MAKASISISI ICFNQYGRNS EENERKTGRT EEESITDDES IVAKNQEYIF PSPEEVEKSV 60 EPSVGMVFES LTEAQRYLNV HGLLNGYAIR KGTNYLKKTY QLECNRSGKP KVMENAQRIR 120 RRNYILKTGC KMKVIVKLIN GKWVFTKVDS EHNHNVVSSP SLTKFFLNHK RMTEDEKAFS 180 KILQDARIKP MKIINSDIET TVNYLKKVQN ESPGFYYTMR MDEENIVRSI FWIDTRGRMD 240 YDLYGDFISF DTTFSTNRYN MPFAPIVGIN RHRKNVIFGC ALIEDQTAET FEWVFRTFVE 300 TMSGKKPKII MTDQDTSMKK AIANYMSDVI HSLCIWHIMK NLHEKCGCFM SQKHREGMEK 360 RLNELVYDSL HHLQLMYRLR KLWVPVYFKD TMCPFIHSTS RSESTNSYFK DYVIPKDTIE 420 NFMRQFEIIQ ETSIAKEDEN RFTSLVKEPT YCTHQRIERH AAKLYNRDIF VKFQEELFNS 480 SAFSVNEIIK DHKYTIVKNC FYKNAEFWKD KFIIEVDRIK QEFKCECCKL QRDGLVCCHI 540 LRLFTQLGIN KLPDSCINRR WTKTYREEEL EKQKKKCIED PGCTKAQKAI RYAMVNNKVT 600 DIWSDICNNA ARSKEFLEEL ERFHEKMLKE KEAS*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MAKASISISI ICFNQYGRNS EENERKTGRT EEESITDDES IVAKNQEYIF PSPEEVEKSV  60
EPSVGMVFES LTEAQRYLNV HGLLNGYAIR KGTNYLKKTY QLECNRSGKP KVMENAQRIR  120
RRNYILKTGC KMKVIVKLIN GKWVFTKVDS EHNHNVVSSP SLTKFFLNHK RMTEDEKAFS  180
KILQDARIKP MKIINSDIET TVNYLKKVQN ESPGFYYTMR MDEENIVRSI FWIDTRGRMD  240
YDLYGDFISF DTTFSTNRYN MPFAPIVGIN RHRKNVIFGC ALIEDQTAET FEWVFRTFVE  300
TMSGKKPKII MTDQDTSMKK AIANYMSDVI HSLCIWHIMK NLHEKCGCFM SQKHREGMEK  360
RLNELVYDSL HHLQLMYRLR KLWVPVYFKD TMCPFIHSTS RSESTNSYFK DYVIPKDTIE  420
NFMRQFEIIQ ETSIAKEDEN RFTSLVKEPT YCTHQRIERH AAKLYNRDIF VKFQEELFNS  480
SAFSVNEIIK DHKYTIVKNC FYKNAEFWKD KFIIEVDRIK QEFKCECCKL QRDGLVCCHI  540
LRLFTQLGIN KLPDSCINRR WTKTYREEEL EKQKKKCIED PGCTKAQKAI RYAMVNNKVT  600
DIWSDICNNA ARSKEFLEEL ERFHEKMLKE KEAS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG527400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9T3X6	0.0	A0A0A9T3X6_ARUDO; Uncharacterized protein
STRING	Pavir.Ha01487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG527400.1.p