PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG529800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 272aa    MW: 29120.2 Da    PI: 9.7012
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG529800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.11.2e-32391312103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+sF +g+ 
  Pavir.5KG529800.1.p  39 FVAKTFHMVSDPATDAVVRWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHESFLRGQA 119
                          9********************999******************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll  i rkk++
  Pavir.5KG529800.1.p 120 HLLPLIARKKKK 131
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3528122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3135128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-4835128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-163962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-2839128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-167789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1690102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMGSECKDHL QLHAGFGGGG GGGAQQQHRQ EEAVAVAPFV AKTFHMVSDP ATDAVVRWGG  60
ASNTFLVLDP AAFSDYLLPS YFKHRNFASF VRQLNTYGFR KVDTDRWEFA HESFLRGQAH  120
LLPLIARKKK KAAGGGRELG EEGEEVRGTI RAVQRLREEQ RGMEEELQAM DRRLRAAESR  180
PGQMMAFLAK LADDPGVVLR AMLAKEEELA AAGKGAPPPP LPAVKAPGKR RRVGAGAGAE  240
AAVAGDAAAE LAAQGRGAVP FPFSVLGQVF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-253612826129Heat shock factor protein 1
5d5v_B4e-253612826129Heat shock factor protein 1
5d5v_D4e-253612826129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG529800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540420.0EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311267.11e-143heat stress transcription factor C-1b
SwissprotQ942D61e-132HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A1B6Q5W31e-141A0A1B6Q5W3_SORBI; Uncharacterized protein
STRINGPavir.J32219.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]