PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG530300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 263aa    MW: 27727.2 Da    PI: 8.2226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG530300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32183241159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Pavir.5KG530300.1.p 183 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 241
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33169241IPR003657WRKY domain
SuperFamilySSF1182901.83E-28176242IPR003657WRKY domain
PROSITE profilePS5081128.782178243IPR003657WRKY domain
SMARTSM007742.0E-38183242IPR003657WRKY domain
PfamPF031067.3E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MENLQGGDDE PHALPGFPYF SVPSPLPVLD DAPPMSLSSS DDNQHGALAA LQQAACNSLQ  60
LPPLPGPDQL QAAAATVAPA TMILPPMVDW SSLLQQAGLM VGSPPVPGLH QQAAAAAAAA  120
SVQQLDQSGE NYCGEAAGSS GGTAGKEKAR SSGAGRSSAA AAGKKKVSRP RFAFQTRSAN  180
DILDDGYRWR KYGQKAVKNS AHPRSYYRCT HHTCNVKKQV QRLAKDTSIV VTTYEGVHNH  240
PCEKLMEALS PILKQLQFLS QF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24173240774Probable WRKY transcription factor 4
2lex_A4e-24173240774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG530300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282441e-130KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817428.11e-128WRKY transcription factor 23-like isoform X1
TrEMBLA0A2S3HRY61e-127A0A2S3HRY6_9POAL; Uncharacterized protein
TrEMBLA0A2T7DH511e-127A0A2T7DH51_9POAL; Uncharacterized protein
STRINGPavir.Ea02960.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.12e-55WRKY DNA-binding protein 24