PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG539700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 449aa    MW: 50097.1 Da    PI: 4.9679
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG539700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1071.5e-33141042101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+k + e+         weF+++ F +g++
  Pavir.5KG539700.1.p  14 FLSKTYEMVDDPATDAVVGWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKNDPEQ---------WEFANEDFIRGQR 94 
                          9*************************************************************988877.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          + l++i+r+k
  Pavir.5KG539700.1.p  95 HRLKNIHRRK 104
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEAGGGGASS LPPFLSKTYE MVDDPATDAV VGWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKNDPE QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHNQSSAPLA  120
DHERREYEEE IEKLKCENAN LTSELEKNAE KKLDMERRMQ ELESKLIFLE DRQKNLIAYV  180
RDIVRAPGFR SSFVQQPDHH GKKRRLLIPV SVHQDANTEG NEIVHGALTN PPVCRESFDK  240
MESSLNSLEN FFREASEAFD ISYDDGVPGP SSAVVITELH SSGESDPVVP SPPSRMHTSS  300
AGAGDSLSRM YTSSAGAGDS LSSHDVTEST SCAESPPLPQ MQSCTDSRAK VSEIDVNLEP  360
AITETGPSRD QPAEDHPSLA PANDGFWEQF LTEQPGSNAH QEVQSERRDG DSKDYQTRTG  420
DQENLWWGKK NVEQMTEKLG HLTSAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-27410319129Heat shock factor protein 1
5d5v_B2e-27410319129Heat shock factor protein 1
5d5v_D2e-27410319129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.259040.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG539700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4924600.0EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816816.10.0heat stress transcription factor A-4b isoform X2
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A2T7DGU70.0A0A2T7DGU7_9POAL; Uncharacterized protein
STRINGPavir.Eb03132.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-71heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]