PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG540500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 303aa    MW: 32797.1 Da    PI: 4.6558
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG540500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3092150259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY  eHnh+
  Pavir.5KG540500.1.p  92 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYAFEHNHP 150
                          69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-3188152IPR003657WRKY domain
SuperFamilySSF1182904.97E-2690152IPR003657WRKY domain
SMARTSM007741.3E-3691151IPR003657WRKY domain
PROSITE profilePS5081131.82392152IPR003657WRKY domain
PfamPF031063.7E-2693150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPE ESQAAAGAAD AESPRSGPKR ERDLCDIPAS PSSPLPAPKR  60
SRRSVEKRVV SVPLAECGDR PRGASGEGPP PSDSWTWRKY GQKPIKGSPY PRGYYRCSSS  120
KGCPARKQVE RSRADPTVLL VTYAFEHNHP SPQPKGHSCH QQGKASPRPA APKPELAVEQ  180
AELGPELELK TEPEAPEQEL EPEQEQDQEQ KALASLAEPE TAAAATVAPV AEEDESFDFG  240
WFDQYPTWHR SAPYASLPPP EEWERELQGE DALFAGLGEL PECAVVFGRR RELSLAATAP  300
CS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2167152679Disease resistance protein RRS1
5w3x_D3e-2167152679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.5990.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG540500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586170.0KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.10.0probable WRKY transcription factor 65
TrEMBLA0A3L6SS550.0A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-35WRKY DNA-binding protein 65